Run initiated at 2024-06-11 11:45:24 BST
Report generated at 2024-07-05 17:07:22 BST
Input Parameters
Mapping Statistics
Mapping statistics for samples within this Parapipe run.
MultiQC report: None
Gini-Granularity Curves
GG curves characterise coverage inequality. Low GG-area indicates low coverage equality. Low normalised GG-area indicates reads aggregate in small regions, whereas high normalised GG-area indicates reads aggregate in larger regions [1].
Phylogenetic Analysis
All analysis carried out using absolute (Hamming) SNP distance across the whole genome.
Key:
red = samples processed this run.
grey = samples included in the input archive.
SNP Report
MOI Analysis
HL1-2-3
HL1-2
HL1-3
HL2-3
L1.1
L1.2
L1.3
L1.4
L1.5
L1
L2.1
L2.2
L2.3
L2.4
L2.5
L2
L3.1
L3.2
L3.3
L3.4
L3.5
L3